Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs336549 chr3:161114968 T/C 2.86E-5 506 22.95 25.77 17.37 KM Plot
HNSC rs336551 chr3:161109720 T/C 3.46E-5 509 23.37 25.55 17.35 KM Plot
HNSC rs336579 chr3:161086610 G/A 4.02E-5 507 23.37 23.77 17.38 KM Plot
HNSC rs336583 chr3:161081981 A/T 2.09E-5 515 17.38 23.9 24 KM Plot
HNSC rs34178381 chr15:31222585 G/C 4.67E-7 512 22.28 20.83 9.43 KM Plot
HNSC rs34263628 chr20:3775162 GTT/G 4.14E-5 501 25.37 23.37 17.58 KM Plot
HNSC rs34857922 chr1:114420760 C/T 2.92E-5 503 18.23 25 35.97 KM Plot
HNSC rs35386791 chr4:110764207 A/G 4.31E-5 502 16.53 24.07 22.33 KM Plot
HNSC rs35490896 chr1:36202585 G/A 8.34E-14 515 21.37 27.03 3.02 KM Plot
HNSC rs35619616 chr15:31224230 C/A 4.83E-7 510 22.83 19.8 10.6 KM Plot
HNSC rs3731232 chr9:21978443 C/G 2.27E-10 515 5.08 17.85 24.17 KM Plot
HNSC rs373298381 chr1:36270737 TTTTTTTTTTC/T 9.73E-14 512 21.3 27.43 3.02 KM Plot
HNSC rs375564630 chr3:100880087 A/C 1.67E-6 498 22.02 21.27 5.7 KM Plot
HNSC rs3780952 chr10:111650629 T/C 2.85E-5 497 26.8 22.02 16.8 KM Plot
HNSC rs3781240 chr10:94216544 A/G 3.13E-5 506 23.17 21.17 9.3 KM Plot